ChemPencil

2D chemical structure editor

Only for Mac

$9.99

Mac

Draw molecules and reactions in a fast, native editor. Correct stereochemistry, standard InChI and SMILES, properties, stoichiometry and 3-D viewing built in. ChemPencil is a fast, native Mac scientific 2D chemical structure editor for chemists, students, and educators. Sketch molecules the way you think about them, work with real chemistry data — not just pretty pictures — and move files freely between the tools you and your collaborators already use. DRAWING • Single, double, and triple bonds with left/right/center alignment • Wedge, hashed, wavy, bold, and dashed stereo bonds • Ring palette: 3- to 8-membered rings, benzene, cyclopentadiene, cyclohexane chairs • Reaction arrows (forward, equilibrium, retrosynthetic) with conditions above and below the shaft • Curved mechanism arrows (double-barbed and fishhook) • Brackets (square, round, curly), text labels, formal charges, isotopes, highlights, and element coloring • "Magic Hotkeys" for fast atom and bond editing without switching tools CHEMISTRY, NOT JUST GRAPHICS • Implicit hydrogens with live valence and over-valence checking • Calculated properties: formula, MW, monoisotopic mass, TPSA, cLogP, H-bond donors/acceptors, rotatable bonds, degree of unsaturation, formal charge • Simulated isotopic mass spectrum • Nicknames library (Me, Et, Ph, Bn, Ac, Ts, OMe, NO₂, CF₃, CO₂H…) with one-click set / expand • Clean Up Structure, Auto-Orient, Equalize Bond Angles NOMENCLATURE & SEARCH • Generate IUPAC name from structure • Structure from IUPAC name • Find and Replace substructure, query atoms, query bonds, atom lists, SMARTS REACTIONS • Reaction conditions editor • Atom-to-atom mapping • Reaction stoichiometry panel INTEROPERABILITY • Read and write native .chemp, MOL, SDF, RXN, RDF, SMILES, CDXML • Copy InChI, InChIKey, SMILES, MOLfile, CDXML, SMARTS • Export PDF (vector), SVG, PNG, TIFF • Rich clipboard: paste vector + raster + native into any app • QuickLook thumbnails and previews in Finder 3D VIEWER • Interactive SceneKit 3D window for any 2D structure DESIGNED FOR MAC • Universal binary (Apple silicon + Intel) • Sandboxed and hardened, no telemetry, no account required • AppleScript automation • Multiple document windows, page setup, and printing Includes ready-made sample documents (aspirin synthesis, caffeine, amino acids, and more) to explore right after you launch.

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ChemPencil 2.1 brings one shared editor to macOS and Windows. • Correct stereochemistry: structures from SMILES and names now show the right enantiomer, and R/S names are fixed. Please re-check structures you created from SMILES or names in earlier versions. • Standard InChI with stereo, via the official InChI library. • Canonical isomeric SMILES for Copy SMILES and export. • MOL export keeps wedge and hash bonds. • Faster editing of large structures, more reliable aromatic handling. • Many drawing fixes: straight triple bonds, Clean Up keeps molecules in place, nudge/rotate with the arrow keys (Mac), working Stoichiometry amounts. • Updated help with new screenshots.

The developer, Code Maker Inc., indicated that the app’s privacy practices may include handling of data as described below. For more information, see the developer’s privacy policy .

  • Data Not Collected

    The developer does not collect any data from this app.

    Privacy practices may vary, for example, based on the features you use or your age. Learn More

    The developer has not yet indicated which accessibility features this app supports. Learn More

    Seller
    Code Maker Inc.
    Size
    126.2 MB
    Category
    Productivity
    Compatibility
    Requires macOS 12.0 or later.
    • Mac
      Requires macOS 12.0 or later.
    Languages
    English
    Age Rating
    4+
    Copyright
    © Code Maker Inc.