ChemPencil
2D chemical structure editor
Only for Mac
$9.99
Mac
Draw molecules and reactions in a fast, native editor. Correct stereochemistry, standard InChI and SMILES, properties, stoichiometry and 3-D viewing built in.
ChemPencil is a fast, native Mac scientific 2D chemical structure
editor for chemists, students, and educators. Sketch molecules the
way you think about them, work with real chemistry data — not just
pretty pictures — and move files freely between the tools you and
your collaborators already use.
DRAWING
• Single, double, and triple bonds with left/right/center alignment
• Wedge, hashed, wavy, bold, and dashed stereo bonds
• Ring palette: 3- to 8-membered rings, benzene, cyclopentadiene,
cyclohexane chairs
• Reaction arrows (forward, equilibrium, retrosynthetic) with
conditions above and below the shaft
• Curved mechanism arrows (double-barbed and fishhook)
• Brackets (square, round, curly), text labels, formal charges,
isotopes, highlights, and element coloring
• "Magic Hotkeys" for fast atom and bond editing without switching
tools
CHEMISTRY, NOT JUST GRAPHICS
• Implicit hydrogens with live valence and over-valence checking
• Calculated properties: formula, MW, monoisotopic mass, TPSA,
cLogP, H-bond donors/acceptors, rotatable bonds, degree of
unsaturation, formal charge
• Simulated isotopic mass spectrum
• Nicknames library (Me, Et, Ph, Bn, Ac, Ts, OMe, NO₂, CF₃, CO₂H…)
with one-click set / expand
• Clean Up Structure, Auto-Orient, Equalize Bond Angles
NOMENCLATURE & SEARCH
• Generate IUPAC name from structure
• Structure from IUPAC name
• Find and Replace substructure, query atoms, query bonds,
atom lists, SMARTS
REACTIONS
• Reaction conditions editor
• Atom-to-atom mapping
• Reaction stoichiometry panel
INTEROPERABILITY
• Read and write native .chemp, MOL, SDF, RXN, RDF, SMILES, CDXML
• Copy InChI, InChIKey, SMILES, MOLfile, CDXML, SMARTS
• Export PDF (vector), SVG, PNG, TIFF
• Rich clipboard: paste vector + raster + native into any app
• QuickLook thumbnails and previews in Finder
3D VIEWER
• Interactive SceneKit 3D window for any 2D structure
DESIGNED FOR MAC
• Universal binary (Apple silicon + Intel)
• Sandboxed and hardened, no telemetry, no account required
• AppleScript automation
• Multiple document windows, page setup, and printing
Includes ready-made sample documents (aspirin synthesis, caffeine,
amino acids, and more) to explore right after you launch.
- This app hasn’t received enough ratings or reviews to display an overview.
ChemPencil 2.1 brings one shared editor to macOS and Windows. • Correct stereochemistry: structures from SMILES and names now show the right enantiomer, and R/S names are fixed. Please re-check structures you created from SMILES or names in earlier versions. • Standard InChI with stereo, via the official InChI library. • Canonical isomeric SMILES for Copy SMILES and export. • MOL export keeps wedge and hash bonds. • Faster editing of large structures, more reliable aromatic handling. • Many drawing fixes: straight triple bonds, Clean Up keeps molecules in place, nudge/rotate with the arrow keys (Mac), working Stoichiometry amounts. • Updated help with new screenshots.
The developer, Code Maker Inc., indicated that the app’s privacy practices may include handling of data as described below. For more information, see the developer’s privacy policy .
Data Not Collected
The developer does not collect any data from this app.
Accessibility
The developer has not yet indicated which accessibility features this app supports. Learn More
Information
- Seller
- Code Maker Inc.
- Size
- 126.2 MB
- Category
- Productivity
- Compatibility
Requires macOS 12.0 or later.
- Mac
Requires macOS 12.0 or later.
- Mac
- Languages
- English
- Age Rating
4+
- 4+
- Copyright
- © Code Maker Inc.

